Index

B

bias (steamboat.model.NonNegBias property)

BilinearAttention (class in steamboat.model)

C

calc_adjacency_freq() (in module steamboat.tools) calc_geneset_auroc() (in module steamboat.tools) calc_geneset_auroc_order() (in module steamboat.tools) calc_head_weights() (in module steamboat.tools) calc_head_weights_quantile() (in module steamboat.tools)

calc_interaction() (in module steamboat.tools) calc_obs() (in module steamboat.tools) calc_v_weights() (in module steamboat.tools) calc_var() (in module steamboat.tools) contribution_by_scale() (in module steamboat.tools) contribution_by_scale_and_head() (in module steamboat.tools)

E

explained_variance_by_scale() (in module steamboat.tools)

F

find_top_celltypes() (in module steamboat.tools) find_top_lrs() (in module steamboat.tools) fit() (steamboat.model.Steamboat method) forward() (steamboat.model.BilinearAttention method) (steamboat.model.NonNegBias method) (steamboat.model.NonNegLinear method) (steamboat.model.NonNegScale method) (steamboat.model.Steamboat method)

G

gather_obs() (in module steamboat.tools) get_bias() (steamboat.model.Steamboat method) get_ego_transform() (steamboat.model.Steamboat method)

get_global_transform() (steamboat.model.Steamboat method) get_local_transform() (steamboat.model.Steamboat method) get_top_features() (steamboat.model.Steamboat method)

L

leiden() (in module steamboat.tools)

M

make_dataset() (in module steamboat.dataset) masking() (steamboat.model.Steamboat method) module steamboat steamboat.dataset steamboat.model steamboat.tools steamboat.utils

N

neighbors() (in module steamboat.tools) NonNegBias (class in steamboat.model)

NonNegLinear (class in steamboat.model) NonNegScale (class in steamboat.model)

P

plot_all_transforms() (in module steamboat.tools) plot_all_transforms2() (in module steamboat.tools) plot_cell_type_enrichment() (in module steamboat.tools) plot_geneset_auroc() (in module steamboat.tools)

plot_head_weights() (in module steamboat.tools) plot_vq() (in module steamboat.tools) plot_wq() (in module steamboat.tools) prep_adatas() (in module steamboat.dataset)

R

rank() (in module steamboat.tools)

read_lrdb() (in module steamboat.tools)

S

scale (steamboat.model.NonNegScale property) score_cells() (steamboat.model.Steamboat method) score_global() (steamboat.model.Steamboat method) score_interactive() (steamboat.model.BilinearAttention method) score_intrinsic() (steamboat.model.BilinearAttention method) score_local() (steamboat.model.Steamboat method) score_lrs() (in module steamboat.tools) segment() (in module steamboat.tools) set_random_seed() (in module steamboat.utils) steamboat module

Steamboat (class in steamboat.model) steamboat.dataset module steamboat.model module steamboat.tools module steamboat.utils module SteamboatDataset (class in steamboat.dataset)

T

to() (steamboat.dataset.SteamboatDataset method)

transform() (steamboat.model.Steamboat method)

W

weight (steamboat.model.NonNegLinear property)